GEORGIOS GEORGAKILAS verfügbar

GEORGIOS GEORGAKILAS

PhD. Senior Bioinformatician with expertise on Machine Learning and Deep Learning.

verfügbar
Profilbild von GEORGIOS GEORGAKILAS PhD. Senior Bioinformatician with expertise on Machine Learning and Deep Learning. aus KALAMATA
  • 24100 KALAMATA Freelancer in
  • Abschluss: nicht angegeben
  • Stunden-/Tagessatz:
  • Sprachkenntnisse: englisch (verhandlungssicher) | griechisch (Muttersprache) | italienisch (Grundkenntnisse)
  • Letztes Update: 01.05.2020
SCHLAGWORTE
PROFILBILD
Profilbild von GEORGIOS GEORGAKILAS PhD. Senior Bioinformatician with expertise on Machine Learning and Deep Learning. aus KALAMATA
DATEIANLAGEN
CV

Diese Anzeige ist nur für angemeldete Nutzer möglich.

SKILLS
Scientific skills
Extensive Experience in the field of Computational Biology, Algorithms, Machine Learning, Deep Learning, Single cell omics, Next Generation Sequencing data analysis, Biostatistics, Epigenetics, Genomics and RNA Biology.

Programming skills
Proficient in Perl, Python, R, Unix shell scripting, Keras and TensorFlow.
PROJEKTHISTORIE
Job Experience & Education
1/9/2018-Present
Postdoctoral Researcher, CEITEC, Masaryk University, Czech Republic.
Principal Investigator: Panagiotis Alexiou.

15/8/2016-31/5/2018 Postdoctoral Researcher, Department of Genetics, Perelman School of Medicine, University of Pennsylvania, USA.
Principal Investigator: Golnaz Vahedi.

1/10/2015-14/8/2016 Postdoctoral Research Scholar, Hellenic Pasteur Institute, Greece.
Principal Investigator: Artemis Hatzigeorgiou.

25/3/2012-30/9/2015
Ph.D. in Bioinformatics and microRNA Biology, Department of Electrical and Computer Engineering, University of Thessaly, Greece.
Ph.D. thesis: Pattern recognition for non-coding RNA promoters.
Supervisor: Artemis Hatzigeorgiou.

1/9/2009-20/12/2011
MSc in Bioinformatics, Postgraduate program ‘Information Technologies in Medicine and Biology’, Department of Informatics and Telecommunication, University of Athens, Greece.
MSc thesis: Predicting microRNA transcription start sites using high-throughput data.
Supervisor: Artemis Hatzigeorgiou.

Previous Projects & Scientific Publications (2,700 citations based on Google Scholar)

1. Johnson JL*, Georgakilas G*, Petrovic J* et al. Lineage-Determining Transcription Factor TCF-1 Initiates the Epigenetic Identity of T Cells. 2018 - Cell Immunity, IF: 19.73. (*joint first authorship, 4 citations, Google Scholars)

2. Cai S, Georgakilas G, Johnson JL, Vahedi G. A cosine similarity-based method to infer variability of chromatin accessibility at the single-cell level. 2018 - Frontiers in Genetics, IF: 3.78.

3. Johnson B ... Georgakilas G et al. Biotin tagging of MeCP2 reveals contextual insights into the Rett syndrome transcriptome. 2017 - Nature Medicine, IF: 32.62. (13 citations, Google Scholars)

4. Papanicolaou A ... Georgakilas G et al. The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. 2016 - Genome Biology, IF: 11.9. (33 citations, Google Scholars)

5. Vlachos IS ... Georgakilas G et al. DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. 2016 - Nucleic Acids Res, IF: 11.56. (10 citations, Google Scholars)

6. Georgakilas G et al. DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. 2015 - Nucleic Acids Res, IF: 11.56. (23 citations, Google Scholars)

7. Paraskevopoulou MD ... Georgakilas G et al. DIANA-LncBase v2: Indexing microRNA targets on non-coding transcripts. 2015 - Nucleic Acids Res, IF: 11.56. (54 citations, Google Scholars)

8. Vlachos IS ... Georgakilas G et al. DIANA-miRPath v3.0: deciphering microRNA function with experimental support. 2015 - Nucleic Acids Res, IF: 11.56. (308 citations, Google Scholars)

9. Georgakilas G et al. microTSS: accurate microRNA transcription start site identification reveals a significant number of divergent pri-miRNAs. 2014 - Nature Communications, IF: 12.35. (34 citations, Google Scholar)

10. Vlachos IS ... Georgakilas G et al. DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions. 2014 - Nucleic Acids Res, IF: 11.56. (366 citations, Google Scholar)

11. Vergoulis T ... Georgakilas G et al. mirPub: a database for searching microRNA publications. 2014 – Bioinformatics, IF: 5.48. (12 citations, Google Scholar)

12. Paraskevopoulou MD*, Georgakilas G* et al. DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. 2013 - Nucleic Acids Res, IF: 11.56. (*joint first authorship, 411 citations, Google Scholar)

13. Paraskevopoulou MD*, Georgakilas, G.* et al. DIANA-LncBase: Experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. 2013 - Nucleic Acids Res, IF: 11.56. (*joint first authorship, 188 citations, Google Scholar)

14. Vlachos IS ... Georgakilas, G et al. DIANA miRPath v.2.0: Investigating the combinatorial effect of microRNAs in pathways. 2012 - Nucleic Acids Res, IF: 11.56. (425 citations, Google Scholar)

15. Vergoulis T ... Georgakilas G et al. TarBase 6.0: Capturing the exponential growth of miRNA targets with experimental support. 2012 - Nucleic Acids Res, IF: 11.56. (490 citations, Google Scholar)
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